miloR - Differential neighbourhood abundance testing on a graph
Milo performs single-cell differential abundance testing. Cell states are modelled as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using either a negative bionomial generalized linear model or negative binomial generalized linear mixed model.
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singlecellmultiplecomparisonfunctionalgenomicssoftwareopenblascppopenmp
10.00 score 450 stars 2 dependents 22 scripts 2.0k downloadsMouseThymusAgeing - Single-cell Transcriptomics Data of the Ageing Mouse Thymus
This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.
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experimenthubsinglecelldataexpressiondataexperimentdatadatapkg
4.00 score 9 scripts